Proceedings of the 2014 International Conference on Mechatronics, Control and Electronic Engineering

Design and implementation of web-based genotyping system of Newcastle disease viruse

Authors
Yongzhong Cao, Wanghong Lu, Jianfen Zhang, Xiufan Liu
Corresponding Author
Yongzhong Cao
Available Online March 2014.
DOI
https://doi.org/10.2991/mce-14.2014.77How to use a DOI?
Keywords
Newcastle Disease Virus; Genotyping system; JavaScript Page Language
Abstract
According to the genotyping method of Newcastle disease virus (NDV), a web-based genotyping system is developed by using Java Server Pages (JSP) technology and MySQL server database technology. Users input the sequence file in FASTA or GenBank format, or pasted either the nucleotide or amino acid sequences of the F gene or the complete genome sequence of NDV into given textbox, then the system was performed to acquire the information of enzyme restriction sites and specific amino acid sites after analyzing the sequence automatically. The sites information was then compared with the genotyping standards and the genotype of NDV strains which belong to class II division was determined and displayed subsequently. In the validation test, representative sequences of genotypes I-IX of NDV strains were determined individually, and the results of genotyping were completely consistent with the genotypes identified manually. The system is available online, without charge, at http://ndv.yzu.edu.cn/index.html .
Open Access
This is an open access article distributed under the CC BY-NC license.

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Proceedings
2014 International Conference on Mechatronics, Control and Electronic Engineering (MCE-14)
Part of series
Advances in Intelligent Systems Research
Publication Date
March 2014
ISBN
978-94-62520-31-8
ISSN
1951-6851
DOI
https://doi.org/10.2991/mce-14.2014.77How to use a DOI?
Open Access
This is an open access article distributed under the CC BY-NC license.

Cite this article

TY  - CONF
AU  - Yongzhong Cao
AU  - Wanghong Lu
AU  - Jianfen Zhang
AU  - Xiufan Liu
PY  - 2014/03
DA  - 2014/03
TI  - Design and implementation of web-based genotyping system of Newcastle disease viruse
BT  - 2014 International Conference on Mechatronics, Control and Electronic Engineering (MCE-14)
PB  - Atlantis Press
SP  - 348
EP  - 352
SN  - 1951-6851
UR  - https://doi.org/10.2991/mce-14.2014.77
DO  - https://doi.org/10.2991/mce-14.2014.77
ID  - Cao2014/03
ER  -