Proceedings of the 2016 4th International Conference on Electrical & Electronics Engineering and Computer Science (ICEEECS 2016)

A general workflow for differential expression analysis of RNA-seq and introductions on related tools

Authors
Zhong Zhang
Corresponding Author
Zhong Zhang
Available Online December 2016.
DOI
https://doi.org/10.2991/iceeecs-16.2016.69How to use a DOI?
Keywords
RNA-seq, differential expression analysis, TopHat2, Cufflinks
Abstract
RNA-seq technology have been used widely in many biological research field, but analyzing the enormous RNA-seq data is still a big challenge to biologist without sufficient knowledge of bioinformatics. Considering that the differential expression analysis is a crucial and tricky application of RNA-seq, we introduce a general workflow in this paper. In order to make our instruction more practical, we also provide the basic usage of some famous analysis tools for each step of the workflow.
Open Access
This is an open access article distributed under the CC BY-NC license.

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Proceedings
2016 4th International Conference on Electrical & Electronics Engineering and Computer Science (ICEEECS 2016)
Part of series
Advances in Computer Science Research
Publication Date
December 2016
ISBN
978-94-6252-265-7
ISSN
2352-538X
DOI
https://doi.org/10.2991/iceeecs-16.2016.69How to use a DOI?
Open Access
This is an open access article distributed under the CC BY-NC license.

Cite this article

TY  - CONF
AU  - Zhong Zhang
PY  - 2016/12
DA  - 2016/12
TI  - A general workflow for differential expression analysis of RNA-seq and introductions on related tools
BT  - 2016 4th International Conference on Electrical & Electronics Engineering and Computer Science (ICEEECS 2016)
PB  - Atlantis Press
SN  - 2352-538X
UR  - https://doi.org/10.2991/iceeecs-16.2016.69
DO  - https://doi.org/10.2991/iceeecs-16.2016.69
ID  - Zhang2016/12
ER  -