Learning the Trimming Method of Sequence for Removing the Barcodes or Noise
Henghua Shi, Xin Xu
Available Online December 2016.
- https://doi.org/10.2991/mcei-16.2016.85How to use a DOI?
- Trimming method; Barcodes or noise; Sequence; Bioinformatics; Offsets
- The initial sequence reads with next-generation sequencing technology have some barcodes or noise, and need to be removed by trimming method of bioinformatics. The trimming method includes trimmer by column with absolute for fixed length reads or percentage for variable length reads, and quality trimmer by sliding window. For learning the trimming method of sequence for removing the barcodes or Noise, we do some trimming sequence reads experiments, study the trimmer by column with absolute for fixed length reads or percentage for variable length reads, and compare the results for the different setting of quality score values for the quality trimmer by sliding window.
- Open Access
- This is an open access article distributed under the CC BY-NC license.
Cite this article
TY - CONF AU - Henghua Shi AU - Xin Xu PY - 2016/12 DA - 2016/12 TI - Learning the Trimming Method of Sequence for Removing the Barcodes or Noise BT - 2016 6th International Conference on Mechatronics, Computer and Education Informationization (MCEI 2016) PB - Atlantis Press SP - 414 EP - 418 SN - 1951-6851 UR - https://doi.org/10.2991/mcei-16.2016.85 DO - https://doi.org/10.2991/mcei-16.2016.85 ID - Shi2016/12 ER -