Learning the Trimming Method of Sequence for Removing the Barcodes or Noise

DOI

10.2991/mcei-16.2016.85How to use a DOI?

Keywords

Trimming method; Barcodes or noise; Sequence; Bioinformatics; Offsets

Abstract

The initial sequence reads with next-generation sequencing technology have some barcodes or noise, and need to be removed by trimming method of bioinformatics. The trimming method includes trimmer by column with absolute for fixed length reads or percentage for variable length reads, and quality trimmer by sliding window. For learning the trimming method of sequence for removing the barcodes or Noise, we do some trimming sequence reads experiments, study the trimmer by column with absolute for fixed length reads or percentage for variable length reads, and compare the results for the different setting of quality score values for the quality trimmer by sliding window.

Copyright

© 2017, the Authors. Published by Atlantis Press.

Open Access

This is an open access article distributed under the CC BY-NC license (http://creativecommons.org/licenses/by-nc/4.0/).

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TY  - CONF
AU  - Henghua Shi
AU  - Xin Xu
PY  - 2016/12
DA  - 2016/12
TI  - Learning the Trimming Method of Sequence for Removing the Barcodes or Noise
BT  - Proceedings of the 2016 6th International Conference on Mechatronics, Computer and Education Informationization (MCEI 2016)
PB  - Atlantis Press
SP  - 414
EP  - 418
SN  - 1951-6851
UR  - https://doi.org/10.2991/mcei-16.2016.85
DO  - 10.2991/mcei-16.2016.85
ID  - Shi2016/12
ER  -